Transcript: lnc-APOC3-6:13

Basic information

LNCipedia transcript ID: lnc-APOC3-6:13 
LNCipedia gene ID: lnc-APOC3-6
Ensembl Gene ID: ENSG00000256717
Ensembl Transcript ID: ENST00000539305
Location (hg38): chr11:115659658-115843146
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 574 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000539305; ENST00000539305.1; AP000797.3-001; OTTHUMT00000398856.1; NONHSAT024316
Alternative gene names: ENSG00000256717; AP000797.3; ENSG00000256717.1; OTTHUMG00000168214.1; AP002991.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -287.1193 non-coding 
CPAT coding probability 3.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APOC3-6:13 no no no no

Available literature

  1. Zhi (2014), A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM55B-8:1
3.1 lnc-FAM55B-9:1
4.0 lnc-FAM55B-9:1
4.1 lnc-APOC3-6:13
5.0 lnc-APOC3-6:13
5.1 lnc-HMBS-67:5
5.2 lnc-APOC3-6:13