Transcript: lnc-APOC3-6:2

Basic information

LNCipedia transcript ID: lnc-APOC3-6:2 
LNCipedia gene ID: lnc-APOC3-6
Location (hg38): chr11:115923641-115929490
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 382 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019481; NONHSAT024325
Alternative gene names: XLOC_009284; linc-APOC3-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.2921 non-coding 
CPAT coding probability 34.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APOC3-6:2 no no no no

Available literature

  1. Zhi (2014), A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-APOC3-5:2
3.1 lnc-APOC3-6:2
4.0 lnc-APOC3-6:2
4.1 lnc-APOC3-6:2
5.0 lnc-APOC3-6:2
5.1 lnc-HMBS-67:8
5.2 lnc-APOC3-6:2