Transcript: lnc-APOC3-6:8

Basic information

LNCipedia transcript ID: lnc-APOC3-6:8 
LNCipedia gene ID: lnc-APOC3-6
Ensembl Gene ID: ENSG00000257067
Ensembl Transcript ID: ENST00000539222
Location (hg38): chr11:115932857-115940210
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 303 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000539222; ENST00000539222.1; AP000797.4-002; OTTHUMT00000398864.1; NONHSAT024328
Alternative gene names: ENSG00000257067; AP000797.4; ENSG00000257067.1; OTTHUMG00000168217.1; ENSG00000257067.5; AP000797.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.2034 non-coding 
CPAT coding probability 1.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APOC3-6:8 no no no no

Available literature

  1. Zhi (2014), A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-APOC3-4:2
3.1 lnc-APOC3-5:2
4.0 lnc-APOC3-6:8
4.1 lnc-APOC3-6:8
5.0 lnc-APOC3-6:8
5.1 lnc-HMBS-67:10
5.2 lnc-APOC3-6:8