Transcript: lnc-APOL1-16:1

Basic information

LNCipedia transcript ID: lnc-APOL1-16:1 
LNCipedia gene ID: lnc-APOL1-16
Ensembl Gene ID: ENSG00000279652
Ensembl Transcript ID: ENST00000625157
Location (hg38): chr22:35992321-36000469
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 8149 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000625157.1
Alternative gene names: ENSG00000279652.1; RP1-78B3.1; Z82217.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.3598 non-coding 
CPAT coding probability 17.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APOL1-16:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-APOL1-16:1
4.1 lnc-APOL1-16:1
5.0 lnc-APOL1-16:1
5.1 lnc-MCM5-22:1
5.2 lnc-APOL1-16:1