Transcript: lnc-APOL1-1:10

Basic information

LNCipedia transcript ID: lnc-APOL1-1:10 
LNCipedia gene ID: lnc-APOL1-1
Location (hg38): chr22:36388868-36389359
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 492 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT085108; FPKM1_group_20516_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.9948 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APOL1-1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-APOL1-9:1
4.0 lnc-APOL1-9:1
4.1 lnc-APOL1-1:10
5.0 lnc-APOL1-1:10
5.1 lnc-MCM5-36:10
5.2 lnc-APOL1-1:10