Transcript: lnc-APOL1-1:2

Basic information

LNCipedia transcript ID: lnc-APOL1-1:2 
LNCipedia gene ID: lnc-APOL1-1
Ensembl Gene ID: ENSG00000223695
Ensembl Transcript ID: ENST00000424761
Location (hg38): chr22:36388626-36396517
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 510 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029419; ENST00000424761; ENST00000424761.1; RP4-633O19__A.1-001; OTTHUMT00000319084.1; NONHSAT085107
Alternative gene names: XLOC_014226; linc-NCF4-4; ENSG00000223695; RP4-633O19__A.1; ENSG00000223695.1; OTTHUMG00000150616.1; FO393418.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.4831 non-coding 
CPAT coding probability 12.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-APOL1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-APOL1-1:2
3.1 lnc-APOL1-1:2
4.0 lnc-APOL1-1:2
4.1 lnc-APOL1-1:2
5.0 lnc-APOL1-1:2
5.1 lnc-MCM5-36:9
5.2 lnc-APOL1-1:2