Transcript: lnc-AQP2-2:1

Basic information

LNCipedia transcript ID: lnc-AQP2-2:1 
LNCipedia gene ID: lnc-AQP2-2
Location (hg38): chr12:49861207-49865745
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 665 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000547902; ENST00000547902.1; RP11-70F11.7-001; OTTHUMT00000405533.1; NONHSAT028147
Alternative gene names: ENSG00000257253; RP11-70F11.7; ENSG00000257253.1; OTTHUMG00000169707.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -327.2071 non-coding 
CPAT coding probability 11.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-AQP2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AQP2-2:1
3.1 lnc-AQP2-2:1
4.0 lnc-AQP2-2:1
4.1 lnc-AQP2-2:1
5.0 lnc-AQP2-2:1
5.1 lnc-SMARCD1-9:1
5.2 lnc-AQP2-2:1