Transcript: lnc-ARAP2-1:1

Basic information

LNCipedia transcript ID: lnc-ARAP2-1:1 
LNCipedia gene ID: lnc-ARAP2-1
Location (hg38): chr4:35948221-36073835
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1969 bp
Exons: 13
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000503225.1; RP11-399D2.1-001; OTTHUMT00000360432.1; NONHSAT095994
Alternative gene names: ENSG00000251160.1; RP11-399D2.1; OTTHUMG00000160392.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.9012 non-coding 
CPAT coding probability 9.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARAP2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARAP2-1:1
4.0 lnc-ARAP2-1:1
4.1 lnc-ARAP2-1:1
5.0 lnc-ARAP2-1:1
5.1 lnc-GABRA4-73:1
5.2 lnc-ARAP2-1:1