Transcript: lnc-ARAP2-1:2

Basic information

LNCipedia transcript ID: lnc-ARAP2-1:2 
LNCipedia gene ID: lnc-ARAP2-1
Location (hg38): chr4:36045976-36047285
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 677 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000505837.1; RP11-399D2.1-003; OTTHUMT00000360434.1
Alternative gene names: ENSG00000251160.1; RP11-399D2.1; OTTHUMG00000160392.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.9082 non-coding 
CPAT coding probability 4.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARAP2-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARAP2-1:2
4.0 lnc-ARAP2-1:2
4.1 lnc-ARAP2-1:2
5.0 lnc-ARAP2-1:2
5.1 lnc-GABRA4-73:3
5.2 lnc-ARAP2-1:2