Transcript: lnc-ARC-1:6

Basic information

LNCipedia transcript ID: lnc-ARC-1:6 
LNCipedia gene ID: lnc-ARC-1
Location (hg38): chr8:142659298-142663522
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 561 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000506774.1; JRK-009; OTTHUMT00000362920.1; NONHSAT129460
Alternative gene names: ENSG00000234616.3; JRK; OTTHUMG00000160911.2; ENSG00000234616.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.5023 non-coding 
CPAT coding probability 4.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARC-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARC-1:6
4.0 lnc-ARC-1:6
4.1 lnc-ARC-1:6
5.0 lnc-ARC-1:6
5.1 lnc-SLURP2-4:1
5.2 lnc-ARC-1:6