Transcript: lnc-ARCN1-1:1

Basic information

LNCipedia transcript ID: lnc-ARCN1-1:1 
LNCipedia gene ID: lnc-ARCN1-1
Ensembl Gene ID: ENSG00000255176
Ensembl Transcript ID: ENST00000530198
Location (hg38): chr11:118636620-118638097
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1388 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530198.1; AP002954.3-001; OTTHUMT00000389306.1; NONHSAT024504
Alternative gene names: ENSG00000255176.1; AP002954.3; OTTHUMG00000166342.1; AP000941.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.2524 non-coding 
CPAT coding probability 15.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARCN1-1:1 yes no no no

Available literature

  1. Hrdlickova (2014), Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARCN1-1:1
4.0 lnc-ARCN1-1:1
4.1 lnc-ARCN1-1:1
5.0 lnc-ARCN1-1:1
5.1 lnc-HMBS-18:1
5.2 lnc-ARCN1-1:1