Transcript: lnc-ARF5-3:2

Basic information

LNCipedia transcript ID: lnc-ARF5-3:2 
LNCipedia gene ID: lnc-ARF5-3
Ensembl Gene ID: ENSG00000236340
Ensembl Transcript ID: ENST00000450061
Location (hg38): chr7:127215127-127229033
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 788 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000450061.1; AC000099.1-002; OTTHUMT00000141700.1; NONHSAT123131; ENST00000450061.5
Alternative gene names: ENSG00000236340.1; AC000099.1; OTTHUMG00000063970.2; ENSG00000236340.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.6431 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARF5-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARF5-3:2
4.0 lnc-ARF5-3:2
4.1 lnc-ARF5-3:2
5.0 lnc-ARF5-3:2
5.1 lnc-TSPAN33-52:2
5.2 lnc-ARF5-3:2