Transcript: lnc-ARFGAP3-1:2

Basic information

LNCipedia transcript ID: lnc-ARFGAP3-1:2 
LNCipedia gene ID: lnc-ARFGAP3-1
Location (hg38): chr22:42847234-42857294
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 580 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT087084
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1101.3633 coding 
CPAT coding probability 5.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ARFGAP3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-A4GALT-1:2
4.0 lnc-ARFGAP3-1:2
4.1 lnc-ARFGAP3-1:2
5.0 lnc-ARFGAP3-1:2
5.1 lnc-TCF20-10:2
5.2 lnc-ARFGAP3-1:2