Transcript: lnc-ARFGEF2-2:1

Basic information

LNCipedia transcript ID: lnc-ARFGEF2-2:1 
LNCipedia gene ID: lnc-ARFGEF2-2
Location (hg38): chr20:48471345-48476502
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3706 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028561; NONHSAT080149
Alternative gene names: XLOC_013552; linc-ARFGEF2-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.8677 non-coding 
CPAT coding probability 2.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARFGEF2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARFGEF2-2:1
3.1 lnc-ARFGEF2-2:1
4.0 lnc-ARFGEF2-2:1
4.1 lnc-ARFGEF2-2:1
5.0 lnc-ARFGEF2-2:1
5.1 lnc-SNAI1-43:2
5.2 lnc-ARFGEF2-2:1