Transcript: lnc-ARFGEF2-2:11

Basic information

LNCipedia transcript ID: lnc-ARFGEF2-2:11 
LNCipedia gene ID: lnc-ARFGEF2-2
Location (hg38): chr20:48473162-48477558
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3998 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT080156
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.1379 non-coding 
CPAT coding probability 2.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARFGEF2-2:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARFGEF2-2:11
4.0 lnc-ARFGEF2-2:11
4.1 lnc-ARFGEF2-2:11
5.0 lnc-ARFGEF2-2:11
5.1 lnc-SNAI1-43:8
5.2 lnc-ARFGEF2-2:11