Transcript: lnc-ARFGEF2-2:3

Basic information

LNCipedia transcript ID: lnc-ARFGEF2-2:3 
LNCipedia gene ID: lnc-ARFGEF2-2
Location (hg38): chr20:48471348-48477526
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3107 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028203; NONHSAT080150
Alternative gene names: XLOC_013552; linc-ARFGEF2-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 46.7055 non-coding 
CPAT coding probability 5.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ARFGEF2-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARFGEF2-2:3
3.1 lnc-ARFGEF2-2:3
4.0 lnc-ARFGEF2-2:3
4.1 lnc-ARFGEF2-2:3
5.0 lnc-ARFGEF2-2:3
5.1 lnc-SNAI1-43:4
5.2 lnc-ARFGEF2-2:3