Transcript: lnc-ARFGEF2-2:5

Basic information

LNCipedia transcript ID: lnc-ARFGEF2-2:5 
LNCipedia gene ID: lnc-ARFGEF2-2
Location (hg38): chr20:48471977-48502201
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 277 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000457536; ENST00000457536.1; RP5-991B18.1-001; OTTHUMT00000079621.1; NONHSAT080153
Alternative gene names: ENSG00000229963; RP5-991B18.1; ENSG00000229963.1; OTTHUMG00000032683.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.5698 non-coding 
CPAT coding probability 1.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARFGEF2-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARFGEF2-2:5
3.1 lnc-ARFGEF2-2:5
4.0 lnc-ARFGEF2-2:5
4.1 lnc-ARFGEF2-2:5
5.0 lnc-ARFGEF2-2:5
5.1 lnc-SNAI1-43:6
5.2 lnc-ARFGEF2-2:5