Transcript: lnc-ARFGEF2-2:9

Basic information

LNCipedia transcript ID: lnc-ARFGEF2-2:9 
LNCipedia gene ID: lnc-ARFGEF2-2
Location (hg38): chr20:48501589-48517178
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 15100 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028208; NONHSAT080163
Alternative gene names: XLOC_013553; linc-ARFGEF2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.0442 non-coding 
CPAT coding probability 83.81% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ARFGEF2-2:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARFGEF2-2:9
3.1 lnc-ARFGEF2-2:9
4.0 lnc-ARFGEF2-2:9
4.1 lnc-ARFGEF2-2:9
5.0 lnc-ARFGEF2-2:9
5.1 lnc-SNAI1-43:10
5.2 lnc-ARFGEF2-2:9