Transcript: lnc-ARFGEF3-5:1

Basic information

LNCipedia transcript ID: lnc-ARFGEF3-5:1 
LNCipedia gene ID: lnc-ARFGEF3-5
Location (hg38): chr6:138058446-138063308
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4863 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1174:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
FPVAAVTKYHK 100% sense-2
Lee translation initiation sites non-coding 
PhyloCSF score 15.9833 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ARFGEF3-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-KIAA1244-5:1
4.1 lnc-KIAA1244-5:1
5.0 lnc-KIAA1244-5:1
5.1 lnc-TBPL1-80:1
5.2 lnc-ARFGEF3-5:1