Transcript: lnc-ARHGAP11A-1:1

Basic information

LNCipedia transcript ID: lnc-ARHGAP11A-1:1 
LNCipedia gene ID: lnc-ARHGAP11A-1
Ensembl Gene ID: ENSG00000244952
Ensembl Transcript ID: ENST00000500941
Location (hg38): chr15:32613733-32615111
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 732 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000500941.2; RP11-1000B6.5-001; OTTHUMT00000429860.1; NONHSAT041515
Alternative gene names: ENSG00000244952.2; RP11-1000B6.5; OTTHUMG00000175402.1; AC123768.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -164.0688 non-coding 
CPAT coding probability 11.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGAP11A-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARHGAP11A-1:1
4.0 lnc-ARHGAP11A-1:1
4.1 lnc-ARHGAP11A-1:1
5.0 lnc-ARHGAP11A-1:1
5.1 lnc-SNRPN-146:1
5.2 lnc-ARHGAP11A-1:1