Transcript: lnc-ARHGAP17-12:1

Basic information

LNCipedia transcript ID: lnc-ARHGAP17-12:1 
LNCipedia gene ID: lnc-ARHGAP17-12
Location (hg38): chr16:24558500-24561028
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2184 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_1292_chr16:24569820-24572349_brain
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 334.1456 coding 
CPAT coding probability 2.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ARHGAP17-12:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARHGAP17-12:1
4.0 lnc-ARHGAP17-12:1
4.1 lnc-ARHGAP17-12:1
5.0 lnc-ARHGAP17-12:1
5.1 lnc-SULT1A2-148:1
5.2 lnc-ARHGAP17-12:1