Transcript: lnc-ARHGAP26-4:41

Basic information

LNCipedia transcript ID: lnc-ARHGAP26-4:41 
LNCipedia gene ID: lnc-ARHGAP26-4
RefSeq ID: NR_110558
Location (hg38): chr5:142745600-142760993
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2232 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110558; NR_110558.1
Alternative gene names: LOC101926975


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.2111 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGAP26-4:41 no no no no

Available literature

  1. Dudek (2017), Identification of long non-coding RNAs that stimulate cell survival in bladder cancer., Oncotarget
  2. Shen (2016), Downregulated Expression of Long Non-Coding RNA LOC101926975 Impairs both Cell Proliferation and Cell Cycle and Its Clinical Implication in Hirschsprung Disease Patients., Int J Med Sci
  3. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARHGAP26-1:4
4.0 lnc-ARHGAP26-1:4
4.1 lnc-ARHGAP26-4:41
5.0 lnc-ARHGAP26-4:41
5.1 lnc-PCDHGA7-23:40
5.2 lnc-ARHGAP26-4:41