Transcript: lnc-ARHGAP26-4:5

Basic information

LNCipedia transcript ID: lnc-ARHGAP26-4:5 
HGNC Gene Symbol: lnc-ARHGAP26-4    
HGNC Full Gene Name: SPRY4 antisense RNA 1
Ensembl Gene ID: ENSG00000231185
Ensembl Transcript ID: ENST00000443800
Location (hg38): chr5:142404201-142672001
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 566 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000443800.1; AC005592.2-001; OTTHUMT00000257944.1; NONHSAT104310; ENST00000443800.5
Alternative gene names: ENSG00000231185.2; AC005592.2; OTTHUMG00000133693.3; ENSG00000231185.6; SPRY4-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.1395 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGAP26-4:5 yes no no no

Available literature

  1. Dudek (2017), Identification of long non-coding RNAs that stimulate cell survival in bladder cancer., Oncotarget
  2. Shen (2016), Downregulated Expression of Long Non-Coding RNA LOC101926975 Impairs both Cell Proliferation and Cell Cycle and Its Clinical Implication in Hirschsprung Disease Patients., Int J Med Sci
  3. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARHGAP26-4:5
4.0 lnc-ARHGAP26-4:5
4.1 lnc-ARHGAP26-4:5
5.0 lnc-ARHGAP26-4:5
5.1 lnc-PCDHGA7-23:25
5.2 lnc-ARHGAP26-4:5