Transcript: lnc-ARHGAP28-19:1

Basic information

LNCipedia transcript ID: lnc-ARHGAP28-19:1 
LNCipedia gene ID: lnc-ARHGAP28-19
Ensembl Gene ID: ENSG00000266153
Ensembl Transcript ID: ENST00000584896
Location (hg38): chr18:5159332-5171026
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 547 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000584896.1; RP11-190I17.2-001; OTTHUMT00000442050.1; NONHSAT057052
Alternative gene names: ENSG00000266153.1; RP11-190I17.2; OTTHUMG00000178450.1; AP005380.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -203.5392 non-coding 
CPAT coding probability 5.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGAP28-19:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP001496.1-3:1
4.0 lnc-AP001496.1-3:1
4.1 lnc-AP001496.1-3:1
5.0 lnc-AP001496.1-3:1
5.1 lnc-RIOK3-259:1
5.2 lnc-ARHGAP28-19:1