Transcript: lnc-ARHGAP42-6:1

Basic information

LNCipedia transcript ID: lnc-ARHGAP42-6:1 
LNCipedia gene ID: lnc-ARHGAP42-6
Location (hg38): chr11:101346861-101383000
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 388 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT023856; FPKM1_group_5221_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.2589 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGAP42-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM133-6:1
4.0 lnc-TMEM133-6:1
4.1 lnc-TMEM133-6:1
5.0 lnc-TMEM133-6:1
5.1 lnc-DYNC2H1-22:1
5.2 lnc-ARHGAP42-6:1