Transcript: lnc-ARHGEF16-2:1

Basic information

LNCipedia transcript ID: lnc-ARHGEF16-2:1 
LNCipedia gene ID: lnc-ARHGEF16-2
Ensembl Gene ID: ENSG00000272088
Ensembl Transcript ID: ENST00000606489
Location (hg38): chr1:3487246-3487627
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 382 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606489.1
Alternative gene names: ENSG00000272088.1; RP11-168F9.2; AL512413.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.2469 non-coding 
CPAT coding probability 16.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGEF16-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARHGEF16-2:1
4.0 lnc-ARHGEF16-2:1
4.1 lnc-ARHGEF16-2:1
5.0 lnc-ARHGEF16-2:1
5.1 lnc-VAMP3-54:1
5.2 lnc-ARHGEF16-2:1