Transcript: lnc-ARHGEF28-1:2

Basic information

LNCipedia transcript ID: lnc-ARHGEF28-1:2 
LNCipedia gene ID: lnc-ARHGEF28-1
Location (hg38): chr5:73952940-73954011
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1072 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000599835.1
Alternative gene names: ENSG00000259968.2; RP11-428C6.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.8446 non-coding 
CPAT coding probability 4.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGEF28-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-428C6.1.1-1:2
4.0 lnc-RP11-428C6.1.1-1:2
4.1 lnc-RP11-428C6.1.1-1:2
5.0 lnc-RP11-428C6.1.1-1:2
5.1 lnc-MAP1B-27:2
5.2 lnc-ARHGEF28-1:2