Transcript: lnc-ARHGEF38-1:2

Basic information

LNCipedia transcript ID: lnc-ARHGEF38-1:2 
LNCipedia gene ID: lnc-ARHGEF38-1
Location (hg38): chr4:105700134-105708093
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 452 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000508961.1; RP11-311D14.2-002; OTTHUMT00000363920.1; NONHSAT097688
Alternative gene names: ENSG00000249823.1; RP11-311D14.2; OTTHUMG00000161140.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -189.3681 non-coding 
CPAT coding probability 2.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGEF38-1:2 no no no no

Available literature

  1. Yang (2015), Microarray profiling of long non-coding RNA (lncRNA) associated with hypertrophic cardiomyopathy., BMC Cardiovasc Disord


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARHGEF38-1:2
4.0 lnc-ARHGEF38-1:2
4.1 lnc-ARHGEF38-1:2
5.0 lnc-ARHGEF38-1:2
5.1 lnc-GAR1-26:3
5.2 lnc-ARHGEF38-1:2