Transcript: lnc-ARHGEF39-1:2

Basic information

LNCipedia transcript ID: lnc-ARHGEF39-1:2 
LNCipedia gene ID: lnc-ARHGEF39-1
Location (hg38): chr9:35657754-35658017
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 264 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000363046.1
Alternative gene names: ENSG00000269900.2; RMRP


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ARHGEF39-1:2 no no no no

Available literature

  1. Huang (2015), DDX5 and its associated lncRNA Rmrp modulate TH17 cell effector functions., Nature
  2. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  3. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf100-1:2
4.0 lnc-C9orf100-1:2
4.1 lnc-C9orf100-1:2
5.0 lnc-C9orf100-1:2
5.1 lnc-CD72-4:2
5.2 lnc-ARHGEF39-1:2