Transcript: lnc-ARHGEF5-6:1

Basic information

LNCipedia transcript ID: lnc-ARHGEF5-6:1 
LNCipedia gene ID: lnc-ARHGEF5-6
Location (hg38): chr7:144836106-144839226
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3121 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000094439.1|ENCT00000406437.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.7905 non-coding 
CPAT coding probability 12.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARHGEF5-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ARHGEF5-6:1
5.0 lnc-ARHGEF5-6:1
5.1 lnc-ADCK2-59:1
5.2 lnc-ARHGEF5-6:1