Transcript: lnc-ARID1B-2:1

Basic information

LNCipedia transcript ID: lnc-ARID1B-2:1 
LNCipedia gene ID: lnc-ARID1B-2
Location (hg38): chr6:156310904-156353748
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2240 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012001; NONHSAT115684
Alternative gene names: XLOC_005514; linc-ARID1B-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.2768 non-coding 
CPAT coding probability 1.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARID1B-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARID1B-2:2
3.1 lnc-ARID1B-2:1
4.0 lnc-ARID1B-2:1
4.1 lnc-ARID1B-2:1
5.0 lnc-ARID1B-2:1
5.1 lnc-GTF2H5-18:2
5.2 lnc-ARID1B-2:1