Transcript: lnc-ARL16-1:1

Basic information

LNCipedia transcript ID: lnc-ARL16-1:1 
LNCipedia gene ID: lnc-ARL16-1
Ensembl Gene ID: ENSG00000262049
Ensembl Transcript ID: ENST00000575312
Location (hg38): chr17:81701324-81703300
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1977 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000575312.1; RP13-1032I1.7-001; OTTHUMT00000440811.1; NONHSAT056552
Alternative gene names: ENSG00000262049.1; RP13-1032I1.7; OTTHUMG00000178170.1; AC139530.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 40.3108 non-coding 
CPAT coding probability 8.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARL16-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARL16-1:1
4.0 lnc-ARL16-1:1
4.1 lnc-ARL16-1:1
5.0 lnc-ARL16-1:1
5.1 lnc-NPLOC4-6:3
5.2 lnc-ARL16-1:1