Transcript: lnc-ARL4A-1:3

Basic information

LNCipedia transcript ID: lnc-ARL4A-1:3 
LNCipedia gene ID: lnc-ARL4A-1
Ensembl Gene ID: ENSG00000229233
Ensembl Transcript ID: ENST00000437088
Location (hg38): chr7:12654179-12654985
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 432 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000437088; ENST00000437088.1; AC011891.5-001; OTTHUMT00000326048.1; NONHSAT119238
Alternative gene names: ENSG00000229233; AC011891.5; ENSG00000229233.1; OTTHUMG00000152386.1; CTD-2320J21.2; AC011891.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.774 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARL4A-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SCIN-1:1
3.1 lnc-SCIN-1:1
4.0 lnc-SCIN-1:1
4.1 lnc-SCIN-1:1
5.0 lnc-SCIN-1:1
5.1 lnc-AHR-57:1
5.2 lnc-ARL4A-1:3