Transcript: lnc-ARL5C-5:1

Basic information

LNCipedia transcript ID: lnc-ARL5C-5:1 
LNCipedia gene ID: lnc-ARL5C-5
Location (hg38): chr17:39103789-39104040
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 252 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr17_6468_-
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.3081 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARL5C-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARL5C-5:1
4.0 lnc-ARL5C-5:1
4.1 lnc-ARL5C-5:1
5.0 lnc-ARL5C-5:1
5.1 lnc-SRCIN1-26:1
5.2 lnc-ARL5C-5:1