Transcript: lnc-ARL6IP6-1:1

Basic information

LNCipedia transcript ID: lnc-ARL6IP6-1:1 
LNCipedia gene ID: lnc-ARL6IP6-1
Location (hg38): chr2:153265512-153266073
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 443 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003906; NONHSAT074998
Alternative gene names: XLOC_001711; linc-GALNT13-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.8118 non-coding 
CPAT coding probability 6.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARL6IP6-1:1 no no no no

Available literature

  1. Chen (2015), Differential lncRNA expression profiles in recurrent gliomas compared with primary gliomas identified by microarray analysis., Int J Clin Exp Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARL6IP6-1:1
3.1 lnc-ARL6IP6-1:1
4.0 lnc-ARL6IP6-1:1
4.1 lnc-ARL6IP6-1:1
5.0 lnc-ARL6IP6-1:1
5.1 lnc-KCNJ3-13:1
5.2 lnc-ARL6IP6-1:1