Transcript: lnc-ARPC2-1:1

Basic information

LNCipedia transcript ID: lnc-ARPC2-1:1 
LNCipedia gene ID: lnc-ARPC2-1
Location (hg38): chr2:218255319-218257364
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2046 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000562328.1; RP11-378A13.1-001; OTTHUMT00000431766.1; NONHSAT076899
Alternative gene names: ENSG00000261338.1; RP11-378A13.1; OTTHUMG00000176328.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.6223 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARPC2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ARPC2-1:1
4.0 lnc-ARPC2-1:1
4.1 lnc-ARPC2-1:1
5.0 lnc-ARPC2-1:1
5.1 lnc-TMEM169-56:1
5.2 lnc-ARPC2-1:1