Transcript: lnc-ARRDC3-2:1

Basic information

LNCipedia transcript ID: lnc-ARRDC3-2:1 
LNCipedia gene ID: lnc-ARRDC3-2
Ensembl Gene ID: ENSG00000234292
Ensembl Transcript ID: ENST00000440769
Location (hg38): chr5:91280097-91281142
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1046 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440769; ENST00000440769.3; RP11-213H15.1-001; OTTHUMT00000369769.1; NONHSAT102742
Alternative gene names: ENSG00000234292; RP11-213H15.1; ENSG00000234292.3; OTTHUMG00000162618.1; AC123595.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.0548 non-coding 
CPAT coding probability 19.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARRDC3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARRDC3-2:1
3.1 lnc-ARRDC3-2:1
4.0 lnc-ARRDC3-2:1
4.1 lnc-ARRDC3-2:1
5.0 lnc-ARRDC3-2:1
5.1 lnc-ANKRD34B-170:1
5.2 lnc-ARRDC3-2:1