Transcript: lnc-ARRDC3-3:1

Basic information

LNCipedia transcript ID: lnc-ARRDC3-3:1 
LNCipedia gene ID: lnc-ARRDC3-3
Location (hg38): chr5:91242936-91264678
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 274 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010401; NONHSAT102739
Alternative gene names: XLOC_004923; linc-LYSMD3-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 5.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARRDC3-3:1 no no no no

Available literature

  1. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARRDC3-3:1
3.1 lnc-ARRDC3-3:1
4.0 lnc-ARRDC3-3:1
4.1 lnc-ARRDC3-3:1
5.0 lnc-ARRDC3-3:1
5.1 lnc-ANKRD34B-169:1
5.2 lnc-ARRDC3-3:1