Transcript: lnc-ARVCF-4:12

Basic information

LNCipedia transcript ID: lnc-ARVCF-4:12 
LNCipedia gene ID: lnc-ARVCF-4
Ensembl Gene ID: ENSG00000236540
Ensembl Transcript ID: ENST00000415503
Location (hg38): chr22:20062980-20066077
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 508 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415503.1; AC006547.13-001; OTTHUMT00000319848.1; NONHSAT083467; ENST00000415503.5
Alternative gene names: ENSG00000236540.1; AC006547.13; OTTHUMG00000150731.1; ENSG00000236540.3; ENSG00000236540.7; AC006547.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.1205 non-coding 
CPAT coding probability 28.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARVCF-4:12 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRMT2A-2:1
4.0 lnc-ARVCF-4:12
4.1 lnc-ARVCF-4:12
5.0 lnc-ARVCF-4:12
5.1 lnc-RTN4R-9:12
5.2 lnc-ARVCF-4:12