Transcript: lnc-ARVCF-4:13

Basic information

LNCipedia transcript ID: lnc-ARVCF-4:13 
LNCipedia gene ID: lnc-ARVCF-4
Ensembl Gene ID: ENSG00000268292
Ensembl Transcript ID: ENST00000600090
Location (hg38): chr22:20064552-20065705
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 583 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT083476; ENST00000600090.1
Alternative gene names: ENSG00000268292.1; AC006547.15; AC006547.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.5678 non-coding 
CPAT coding probability 2.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARVCF-4:13 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRMT2A-2:12
4.0 lnc-ARVCF-4:13
4.1 lnc-ARVCF-4:13
5.0 lnc-ARVCF-4:13
5.1 lnc-RTN4R-9:13
5.2 lnc-ARVCF-4:13