Transcript: lnc-ARVCF-4:14

Basic information

LNCipedia transcript ID: lnc-ARVCF-4:14 
LNCipedia gene ID: lnc-ARVCF-4
Ensembl Gene ID: ENSG00000236540
Ensembl Transcript ID: ENST00000628442
Location (hg38): chr22:20058030-20065251
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 550 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000628442.1
Alternative gene names: ENSG00000236540.7; AC006547.13; AC006547.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.3444 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ARVCF-4:14 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ARVCF-4:14
4.1 lnc-ARVCF-4:14
5.0 lnc-ARVCF-4:14
5.1 lnc-RTN4R-9:14
5.2 lnc-ARVCF-4:14