Transcript: lnc-ASAP2-3:1

Basic information

LNCipedia transcript ID: lnc-ASAP2-3:1 
LNCipedia gene ID: lnc-ASAP2-3
Ensembl Gene ID: ENSG00000261104
Ensembl Transcript ID: ENST00000565044
Location (hg38): chr2:9106593-9109865
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3273 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565044.1; RP11-734K21.5-001; OTTHUMT00000430900.1; NONHSAT069031
Alternative gene names: ENSG00000261104.1; RP11-734K21.5; OTTHUMG00000175721.1; AC093904.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.8855 non-coding 
CPAT coding probability 31.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASAP2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ASAP2-3:1
4.0 lnc-ASAP2-3:1
4.1 lnc-ASAP2-3:1
5.0 lnc-ASAP2-3:1
5.1 lnc-SNX17-219:1
5.2 lnc-ASAP2-3:1