Transcript: lnc-ASB13-1:1

Basic information

LNCipedia transcript ID: lnc-ASB13-1:1 
LNCipedia gene ID: lnc-ASB13-1
Ensembl Gene ID: ENSG00000228951
Ensembl Transcript ID: ENST00000427341
Location (hg38): chr10:5616862-5618161
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 657 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017914; ENST00000427341; ENST00000427341.1; RP11-336A10.4-001; OTTHUMT00000046557.1; NONHSAT011166
Alternative gene names: XLOC_008713; linc-CALML5-4; ENSG00000228951; RP11-336A10.4; ENSG00000228951.1; OTTHUMG00000017599.1; AL365356.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -218.1671 non-coding 
CPAT coding probability 4.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASB13-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ASB13-1:1
3.1 lnc-ASB13-1:1
4.0 lnc-ASB13-1:1
4.1 lnc-ASB13-1:1
5.0 lnc-ASB13-1:1
5.1 lnc-KLF6-57:5
5.2 lnc-ASB13-1:1