Transcript: lnc-ASB3-1:11

Basic information

LNCipedia transcript ID: lnc-ASB3-1:11 
LNCipedia gene ID: lnc-ASB3-1
Location (hg38): chr2:52618862-52934500
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4440 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000048410.1|FTMT20500100039.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -80.3789 non-coding 
CPAT coding probability 2.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASB3-1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ASB3-1:11
5.0 lnc-ASB3-1:11
5.1 lnc-PPP4R3B-54:6
5.2 lnc-ASB3-1:11