Transcript: lnc-ASB5-2:3

Basic information

LNCipedia transcript ID: lnc-ASB5-2:3 
LNCipedia gene ID: lnc-ASB5-2
Location (hg38): chr4:176310685-176320497
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 9813 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000248980.1|ENCT00000338984.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -30.0826 non-coding 
CPAT coding probability 85.14% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ASB5-2:3 yes no no no

Available literature

  1. Zhou (2015), Genomic analysis of drug resistant pancreatic cancer cell line by combining long non-coding RNA and mRNA expression profling., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ASB5-2:3
5.0 lnc-ASB5-2:3
5.1 lnc-AGA-10:2
5.2 lnc-ASB5-2:3