Transcript: lnc-ASB5-2:5

Basic information

LNCipedia transcript ID: lnc-ASB5-2:5 
LNCipedia gene ID: lnc-ASB5-2
Ensembl Gene ID: ENSG00000248980
Ensembl Transcript ID: ENST00000512634
Location (hg38): chr4:176308268-176320458
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 610 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000512634.1; RP11-87F15.2-001; OTTHUMT00000362343.1; NONHSAT099356
Alternative gene names: ENSG00000248980.1; RP11-87F15.2; OTTHUMG00000160792.1; AC019163.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.3159 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASB5-2:5 yes no no no

Available literature

  1. Zhou (2015), Genomic analysis of drug resistant pancreatic cancer cell line by combining long non-coding RNA and mRNA expression profling., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ASB5-1:1
4.0 lnc-ASB5-1:1
4.1 lnc-ASB5-2:5
5.0 lnc-ASB5-2:5
5.1 lnc-AGA-10:3
5.2 lnc-ASB5-2:5