Transcript: lnc-ASCL1-6:4

Basic information

LNCipedia transcript ID: lnc-ASCL1-6:4 
LNCipedia gene ID: lnc-ASCL1-6
Location (hg38): chr12:103151826-103163616
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 618 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021195; NONHSAT030351
Alternative gene names: XLOC_009858; linc-STAB2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -277.084 non-coding 
CPAT coding probability 6.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASCL1-6:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-552I14.1.1-1:3
3.1 lnc-RP11-552I14.1.1-1:1
4.0 lnc-RP11-552I14.1.1-1:1
4.1 lnc-RP11-552I14.1.1-1:1
5.0 lnc-RP11-552I14.1.1-1:1
5.1 lnc-STAB2-6:4
5.2 lnc-ASCL1-6:4