Transcript: lnc-ASPHD1-1:2

Basic information

LNCipedia transcript ID: lnc-ASPHD1-1:2 
LNCipedia gene ID: lnc-ASPHD1-1
Location (hg38): chr16:29927336-29929470
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1248 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000450909; NONHSAT141673
Alternative gene names: ENSG00000247735; AC120114.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.5152 non-coding 
CPAT coding probability 23.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASPHD1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ASPHD1-1:1
3.1 lnc-ASPHD1-1:2
4.0 lnc-ASPHD1-1:2
4.1 lnc-ASPHD1-1:2
5.0 lnc-ASPHD1-1:2
5.1 lnc-PRRT2-13:7
5.2 lnc-ASPHD1-1:2