Transcript: lnc-ASTN1-2:1

Basic information

LNCipedia transcript ID: lnc-ASTN1-2:1 
LNCipedia gene ID: lnc-ASTN1-2
Location (hg38): chr1:176778179-176779636
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1099 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_151_chr1:176747314-176748772_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.8808 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ASTN1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ASTN1-2:1
4.0 lnc-ASTN1-2:1
4.1 lnc-ASTN1-2:1
5.0 lnc-ASTN1-2:1
5.1 lnc-SH2D1B-149:1
5.2 lnc-ASTN1-2:1