Transcript: lnc-ATAD2B-13:1

Basic information

LNCipedia transcript ID: lnc-ATAD2B-13:1 
LNCipedia gene ID: lnc-ATAD2B-13
Ensembl Gene ID: ENSG00000224361
Ensembl Transcript ID: ENST00000430988
Location (hg38): chr2:23507043-23524344
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 584 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430988.1
Alternative gene names: ENSG00000224361.1; AC011239.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -149.9168 non-coding 
CPAT coding probability 13.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ATAD2B-13:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC011239.1.1-13:1
4.1 lnc-AC011239.1.1-13:1
5.0 lnc-AC011239.1.1-13:1
5.1 lnc-DNAJC27-46:1
5.2 lnc-ATAD2B-13:1